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Pathogenomix Inc ripseq ngs software
Ripseq Ngs Software, supplied by Pathogenomix Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/ripseq+software/ripseq+ngs+software/pm39584837-42-5-8
Average 90 stars, based on 1 article reviews
ripseq ngs software - by Bioz Stars, 2026-10
90/100 stars

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Article Title: Performance of Vitek MS v3.0 for Identification of Mycobacterium Species from Patient Samples by Use of Automated Liquid Medium Systems
Article Snippet: The resulting ~500 bp gene was analyzed using Ripseq 200 software (Pathogenomix, Santa Cruz, CA).

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Article Title: Performance of Vitek MS v3.0 for Identification of Mycobacterium Species from Patient Samples by Use of Automated Liquid Medium Systems
Article Snippet: Partial 16S rRNA gene sequencing was performed on the samples using MicroSeq 16S rDNA PCR and sequencing kits according to the manufacturer's recommendations (Life Technologies, Carlsbad, CA). .. The resulting ∼500-bp gene was analyzed using RipSeq software (Pathogenomix, Santa Cruz, CA). ..

Article Title: Identification of microbial agents in culture-negative brain abscess samples by 16S/18S rRNA gene PCR and sequencing.
Article Snippet: .. Chromatograms were analyzed using the Ripseq software (Pathogenomix, Santa Cruz, CA, Kommedal et al., 2014). .. Species identification was performed according to the Clinical and Laboratory Standards Institute (CLSI) guidelines (CLSI, 2018).

Article Title: Gastrointestinal colonization of extended-spectrum beta-lactamase-producing bacteria among children below five years of age hospitalized with fever in Dar es Salaam, Tanzania.
Article Snippet: Sequencing was done using the same reverse primers sed in PCR reaction and BigDye Terminator v.1.1 Cycle Sequencing it (Applied Biosystems, Foster City, CA, USA) and an ABI PRISM 730 DNA Analyzer (Applied Biosystems). .. Sequences were analysed sing the RipSeq software (Pathogenomix Inc., CA, USA). ..

Article Title: Diagnostics with clinical microbiome-based identification of microorganisms in patients with brain abscesses-a prospective cohort study.
Article Snippet: Department of Clinical Microbiology, Copenhagen University Hospital Rigshospitalet, Copenhagen; Department of Clinical Microbiology, Copenhagen University Hospital Hvidovre, Hvidovre; Department of Clinical Microbiology, Odense University Hospital, Odense; Department of Neurosurgery, Copenhagen University Hospital Rigshospitalet, Copenhagen; Department of Neuroanesthesiology, Copenhagen University Hospital Rigshospitalet, Copenhagen; Department of Clinical Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen; Department of Infectious Diseases, Copenhagen University Hospital Rigshospitalet, Copenhagen; and Department of Bacteria, Fungi and Parasites, Statens Serum Institut, Copenhagen, Denmark

Article Title: Validation and Retrospective Clinical Evaluation of a Quantitative 16S rRNA Gene Metagenomic Sequencing Assay for Bacterial Pathogen Detection in Body Fluids.
Article Snippet: Disclosure: O.K. has consulted as a medical adviser for Pathogenomix Inc. and has contributed to the development of the RipSeq software. .. He is also a minor shareholder in Pathogenomix Inc. O.S. have contributed to the development of the RipSeq software and is a shareholder in Pathogenomix Inc. Pathogenomix Inc. (Santa Cruz, CA) funded this study. ..

Article Title: Evaluation of the Vitek MS v3.0 Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry System for Identification of Mycobacterium and Nocardia Species
Article Snippet: Partial 16S rRNA gene sequencing was 133 performed on the samples using Microseq rDNA PCR and sequencing kits according to 134 manufacturer’s recommendations (Life Technologies, Carlsbad, CA). .. The resulting 135 ~500bp gene was analyzed using Ripseq software (Pathogenomix, Santa Cruz, CA). ..



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Pathogenomix Inc pathonomix ripseq software
(a) Alignment of the partial 16S rRNA gene sequence from the case isolate of F. sanguinis with F. sanguinis strain CCUG 47711 chromosome, complete genome (sequence ID: CP027226). There are two mismatches at position 202 (G to R=A or G) and at position 439 (A to R) resulting in a match of 99.5 %. (b) Alignment of the sequence obtained from the mixed sequence from the case isolate using <t>the</t> <t>Pathogenomix</t> <t>Ripseq</t> software and database, of M. indoligenes with M. indoligenes strain MDA2477 (sequence ID: AF527773). There are several mismatches and gaps, resulting in a match of 95.4 %.
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(a) Alignment of the partial 16S rRNA gene sequence from the case isolate of F. sanguinis with F. sanguinis strain CCUG 47711 chromosome, complete genome (sequence ID: CP027226). There are two mismatches at position 202 (G to R=A or G) and at position 439 (A to R) resulting in a match of 99.5 %. (b) Alignment of the sequence obtained from the mixed sequence from the case isolate using the Pathogenomix Ripseq software and database, of M. indoligenes with M. indoligenes strain MDA2477 (sequence ID: AF527773). There are several mismatches and gaps, resulting in a match of 95.4 %.

Journal: Access Microbiology

Article Title: Bacteraemia with Moryella indoligenes and Fastidiosipila sanguinis : a case report

doi: 10.1099/acmi.0.000108

Figure Lengend Snippet: (a) Alignment of the partial 16S rRNA gene sequence from the case isolate of F. sanguinis with F. sanguinis strain CCUG 47711 chromosome, complete genome (sequence ID: CP027226). There are two mismatches at position 202 (G to R=A or G) and at position 439 (A to R) resulting in a match of 99.5 %. (b) Alignment of the sequence obtained from the mixed sequence from the case isolate using the Pathogenomix Ripseq software and database, of M. indoligenes with M. indoligenes strain MDA2477 (sequence ID: AF527773). There are several mismatches and gaps, resulting in a match of 95.4 %.

Article Snippet: Using the Pathogenomix Ripseq software and database the best hits were F. sanguinis with a score of 100, and a Lachnospiraceae species with a score of 99.5 [ ].

Techniques: Sequencing, Software